5FYW | Transcription | date | Mar 10, 2016 |
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title | Transcription Initiation Complex Structures Elucidate Dna Op | ||||||||||||||
authors | C.Plaschka, M.Hantsche, C.Dienemann, C.Burzinski, J.Plitzko, P.Cr | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb1 Chain: A Synonym: Rna Polymerase II Subunit 1, Rna Polymerase II Sub Dna-Directed Rna Polymerase III Largest Subunit, Rna Polyme Subunit B220, Rpb1; Ec: 2.7.7.6 |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb2 Chain: B Synonym: Rna Polymerase II Subunit 2, B150, Dna-Directed Rn Polymerase II 140 Kda Polypeptide, Rpb2; Ec: 2.7.7.6 |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb3 Chain: C Synonym: Rna Polymerase II Subunit 3, Rna Polymerase II Sub B44.5, Dna-Directed Rna Polymerase II 45 Kda Polypeptide, R |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb4 Chain: D Synonym: Rna Polymerase II Subunit B4, B32, Dna-Directed Rn Polymerase II 32 Kda Polypeptide, Rpb4; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 1; Chain: E Synonym: Rna Polymerases I, II, And III Subunit Abc1, Abc27 Directed Rna Polymerases I, II, And III 27 Kda Polypeptide, |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 2; Chain: F Synonym: Rna Polymerases I, II, And III Subunit Abc2, Abc23 Directed Rna Polymerases I, II, And III 23 Kda Polypeptide, |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb7 Chain: G Synonym: Rna Polymerase II Subunit B7, B16, Rpb7 |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 3; Chain: H Synonym: Rna Polymerases I, II, And III Subunit Abc3, Abc14 .5, Dna-Directed Rna Polymerases I, II, And III 14.5 Kda Po Rpb8; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb9 Chain: I Synonym: Rna Polymerase II Subunit B9, B12.6, Dna-Directed Polymerase II 14.2 Kda Polypeptide, Dna-Directed Rna Polyme Subunit 9, Rpb9; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 5; Chain: J Synonym: Rna Polymerases I, II, And III Subunit Abc5, Abc10 C8, Dna-Directed Rna Polymerases I, II, And III 8.3 Kda Pol Rpb10; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb11 Chain: K Synonym: Rna Polymerase II Subunit B11, B13.6, Dna-Directed Polymerase II 13.6 Kda Polypeptide, Rpb11; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun 4; Chain: L Synonym: Rna Polymerases I, II, And III Subunit Abc4, Abc10 Pb12; |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Bj5464 Rpb3 His-Bio | ||||||||||||||
Molecule: Transcription Initiation Factor Iib Chain: M Synonym: General Transcription Factor Tfiib, Transcription Tfiib; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Pet21b | ||||||||||||||
Molecule: Nontemplate Dna Chain: N Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||
Molecule: Tata-Box-Binding Protein Chain: O Synonym: Tata Sequence-Binding Protein, Tbp, Tata-Binding F Ta-Box Factor, Transcription Factor D, Transcription Initia Factor Tfiid Tbp Subunit; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Popine | ||||||||||||||
Molecule: Transcription Initiation Factor Iif Subunit Alpha Chain: Q Synonym: Tfiif-Alpha, Tfiif Large Subunit, Transcription Fa Kda Subunit, P105, Tfg1; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Petduet-1 | ||||||||||||||
Molecule: Transcription Initiation Factor Iif Subunit Beta Chain: R Synonym: Atp-Dependent Helicase Tfg2, Tfiif Medium Subunit, Beta, Transcription Factor G 54 Kda Subunit, Tfg2; Ec: 3.6.4.12 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Petduet-1 | ||||||||||||||
Molecule: Nontemplate Dna Chain: T Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||
Molecule: Transcription Initiation Factor Iia Large Subunit Chain: U Synonym: Tfiia Large Subunit, Tfiia 32 Kda Subunit, Toa1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Popine | ||||||||||||||
Molecule: Transcription Initiation Factor Iia Subunit 2 Chain: V Synonym: General Transcription Factor Iia Subunit 2, Tfiia Subunit, Transcription Initiation Factor Iia Small Chain, Transcription Initiation Factor Iia Small Subunit, Toa2; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Popine | ||||||||||||||
Molecule: Transcription Initiation Factor Iie Subunit Alpha Chain: W Synonym: Tfiie-Alpha, Factor A 66 Kda Subunit, Transcriptio Large Subunit, Tfa1; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Pet21 | ||||||||||||||
Molecule: Transcription Initiation Factor Iie Subunit Beta Chain: X Synonym: Tfiie-Beta, Factor A 43 Kda Subunit, Transcription Small Subunit, Tfa2; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Ril Expression_system_vector_type: Plasmid Expression_system_vector: Pet21 | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 4.35 Å | ||||||||||||
ligand | MG, ZN | enzyme | Transferase E.C.2.7.7.6 BRENDA | ||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Transcription initiation complex structures elucidate DNA opening., Plaschka C, Hantsche M, Dienemann C, Burzinski C, Plitzko J, Cramer P, Nature. 2016 May 11;533(7603):353-8. doi: 10.1038/nature17990. PMID:27193681 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |