OCA Atlas for 5G04

5G04

Cell Cycle

date

Mar 16, 2016

title

Structure Of The Human Apc-Cdc20-Hsl1 Complex

authors

S.Zhang, L.Chang, C.Alfieri, Z.Zhang, J.Yang, S.Maslen, M.Skehel, D

compound

source

Molecule: Anaphase-Promoting Complex Subunit 1
Chain: A
Synonym: Apc1, Cyclosome Subunit 1, Mitotic Checkpoint Regu Testis-Specific Gene 24 Protein, Apc1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pf1, Pu1

Molecule: Anaphase-Promoting Complex Subunit 11
Chain: B
Synonym: Apc11, Cyclosome Subunit 11, Hepatocellular Carcin Associated Ring Finger Protein, Apc11;
Engineered: Yes

Molecule: Cell Division Cycle Protein 23 Homolog
Chain: C, P
Synonym: Anaphase-Promoting Complex Subunit 8, Apc8, Cyclos Subunit 8, Apc8;
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit 15
Chain: D
Synonym: Apc15
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit 16
Chain: E
Synonym: Apc16, Cyclosome Subunit 16, Apc16
Engineered: Yes

Molecule: Cell Division Cycle Protein 27 Homolog
Chain: F, H
Synonym: Anaphase-Promoting Complex Subunit 3, Apc3, Cdc27 Cdc27hs, H-Nuc, Apc3;
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit Cdc26
Chain: G, W
Synonym: Anaphase-Promoting Complex Subunit 12, Apc12, Cell Division Cycle Protein 26 Homolog, Apc12;
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit 4
Chain: I
Synonym: Apc4, Cyclosome Subunit 4, Apc4
Engineered: Yes

Molecule: Cell Division Cycle Protein 16 Homolog
Chain: J, K
Synonym: Anaphase-Promoting Complex Subunit 6, Apc6, Cdc16 Cdc16hs, Cyclosome Subunit 6, Apc6;
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit 10
Chain: L
Synonym: Apc10, Cyclosome Subunit 10, Apc10
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit 13
Chain: M
Synonym: Apc13, Cyclosome Subunit 13, Apc13
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit 2
Chain: N
Synonym: Apc2, Cyclosome Subunit 2, Apc2
Engineered: Yes

Molecule: Anaphase-Promoting Complex Subunit 5
Chain: O
Synonym: Apc5, Cyclosome Subunit 5, Apc5
Engineered: Yes

Molecule: Cell Division Cycle Protein 20 Homolog
Chain: R
Synonym: P55cdc, Cdc20
Engineered: Yes

Molecule: Probable Serinethreonine-Protein Kinase Hsl1
Chain: S
Fragment: Residues 667-872
Synonym: Hsl1
Ec: 2.7.11.1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet28a

Molecule: Anaphase-Promoting Complex Subunit 7
Chain: X, Y
Synonym: Apc7, Cyclosome Subunit 7, Apc7
Engineered: Yes

symmetry

Space Group: P 1

R_factor

0.36213

R_Free

NULL

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

4.00 Å

ligand

enzyme

Transferase E.C.2.7.11.1 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A
B
C, P
D
E
F, H
I
K, J
L
M
N
O
R
W, G
Y, X

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1325 Kb) [Save to disk]

Biological Unit Coordinates (5g04.pdb1.gz) 1301 Kb

LPC: Ligand-Protein Contacts for 5G04

CSU: Contacts of Structural Units for 5G04

Retrieve 5G04 in mmCIF format [Save to disk]

View 5G04 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5G04

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5g04_A] [5g04_J] [5g04_B] [5g04_H] [5g04_F] [5g04_D] [5g04_E] [5g04_Y] [5g04_P] [5g04_R] [5g04_W] [5g04_C] [5g04_N] [5g04_I] [5g04_G] [5g04_O] [5g04_S] [5g04_K] [5g04_M] [5g04] [5g04_X] [5g04_L]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 5G04: [APC10] [APC2] [CULLIN] [RING] [TPR] [WD40 ] by SMART

Other resources with information on 5G04

Community annotation for 5G04 at PDBWiki (http://pdbwiki.org)

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