5G3N	Hydrolase	date	Apr 29, 2016
title	Discovery Of A Novel Secreted Phospholipase A2 (Spla2) Inhib
authors	J.Sandmark, C.Bodin, K.Hallberg
compound		source
Molecule: Phospholipase A2, Membrane Associated Chain: A, B Synonym: 3secreted Phospholipase A2 Type Iia, Giic Spla2, G Phospholipase A2, Non-Pancreatic Secretory Phospholipase A2 Pla2, Phosphatidylcholine 2-Acylhydrolase 2a; Ec: 3.1.1.4 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet24a
symmetry	Space Group: P 21 21 21	R_factor 0.195 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.100 66.530 73.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CA, FMT, X28	enzyme	Hydrolase E.C.3.1.1.4 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of AZD2716: A Novel Secreted Phospholipase A2 (sPLA2) Inhibitor for the Treatment of Coronary Artery Disease., Giordanetto F, Pettersen D, Starke I, Nordberg P, Dahlstrom M, Knerr L, Selmi N, Rosengren B, Larsson LO, Sandmark J, Castaldo M, Dekker N, Karlsson U, Hurt-Camejo E, ACS Med Chem Lett. 2016 Aug 9;7(10):884-889. eCollection 2016 Oct 13. PMID:27774123

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (5g3n.pdb1.gz) 24 Kb Biological Unit Coordinates (5g3n.pdb2.gz) 24 Kb LPC: Ligand-Protein Contacts for 5G3N CSU: Contacts of Structural Units for 5G3N Structure Factors (423 Kb) Retrieve 5G3N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5G3N from S2C, [Save to disk] Re-refined 5g3n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5G3N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5G3N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5g3n_A] [5g3n] [5g3n_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5G3N: [PA2c ] by SMART

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