5G5W Hormone date Jun 08, 2016
title Structure Guided Design And Discovery Of Indazole Ethers As Potent, Non-Steroidal Glucocorticoid Receptor Modulators
authors M.Hemmerling, K.Edman, M.Lepisto, A.Eriksson, S.Ivanova, J.Dahmen H.Rehwinkel, M.Berger, R.Hendrickx, M.Dearman, T.Jellesmark-Jen L.Wissler, T.Hansson
compound source
Molecule: Glucocorticoid Receptor
Chain: A
Fragment: Ligand Binding Domain, Unp Residues 500-777
Synonym: Gr, Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1

Molecule: Nuclear Receptor Coactivator 2
Chain: B
Fragment: Residues 740-753
Synonym: Ncoa-2, Class E Basic Helix-Loop-Helix Protein 75, Transcriptional Intermediary Factor 2, Htif2, Ncoa2;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.179 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.880 83.880 105.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand EDO, R8C enzyme
Primary referenceDiscovery of indazole ethers as novel, potent, non-steroidal glucocorticoid receptor modulators., Hemmerling M, Edman K, Lepisto M, Eriksson A, Ivanova S, Dahmen J, Rehwinkel H, Berger M, Hendrickx R, Dearman M, Jensen TJ, Wissler L, Hansson T, Bioorg Med Chem Lett. 2016 Dec 1;26(23):5741-5748. doi:, 10.1016/j.bmcl.2016.10.052. Epub 2016 Oct 19. PMID:27810243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (5g5w.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 5G5W
  • CSU: Contacts of Structural Units for 5G5W
  • Structure Factors (409 Kb)
  • Retrieve 5G5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5G5W from S2C, [Save to disk]
  • Re-refined 5g5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5G5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5G5W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5g5w_A] [5g5w] [5g5w_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5G5W
  • Community annotation for 5G5W at PDBWiki (http://pdbwiki.org)

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