5GAQ Toxin date Jan 05, 2016
title Cryo-Em Structure Of The Lysenin Pore
authors C.G.Savva, M.Bokori-Brown, T.G.Martin, R.W.Titball, C.E.Naylor, A
compound source
Molecule: Lysenin
Chain: A, B, C, D, E, F, G, H, I
Synonym: Efl1
Engineered: Yes
 Organism_scientific: Eisenia Fetida
Organism_common: Red Wiggler Worm
Organism_taxid: 6396
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Rosetta 2
Expression_system_plasmid: Phis-Parallel 1
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.14 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, I, G
  • toxin activity


    • Primary referenceCryo-EM structure of lysenin pore elucidates membrane insertion by an aerolysin family protein., Bokori-Brown M, Martin TG, Naylor CE, Basak AK, Titball RW, Savva CG, Nat Commun. 2016 Apr 6;7:11293. doi: 10.1038/ncomms11293. PMID:27048994
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (425 Kb) [Save to disk]
  • Biological Unit Coordinates (5gaq.pdb1.gz) 420 Kb
  • CSU: Contacts of Structural Units for 5GAQ
  • Retrieve 5GAQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GAQ from S2C, [Save to disk]
    • View 5GAQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GAQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gaq_F] [5gaq_B] [5gaq_C] [5gaq_E] [5gaq_D] [5gaq] [5gaq_H] [5gaq_I] [5gaq_G] [5gaq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GAQ
  • Community annotation for 5GAQ at PDBWiki (http://pdbwiki.org)

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