5GGV Immune System date Jun 16, 2016
title Ctla-4 In Complex With Tremelimumab Fab
authors Y.S.Heo
compound source
Molecule: Light Chain
Chain: L
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Heavy Chain
Chain: H
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Cytotoxic T-Lymphocyte Protein 4
Chain: Y
Fragment: Unp Residues 36-161
Synonym: Cytotoxic T-Lymphocyte-Associated Antigen 4,Ctla-4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctla4, Cd152
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: P 21 21 2
R_factor 0.181 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.559 48.207 118.714 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
Y


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (5ggv.pdb1.gz) 187 Kb
  • CSU: Contacts of Structural Units for 5GGV
  • Structure Factors (857 Kb)
  • Retrieve 5GGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GGV from S2C, [Save to disk]
  • Re-refined 5ggv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GGV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ggv_H] [5ggv_Y] [5ggv] [5ggv_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5GGV: [IG_like] [IGv ] by SMART
    • Other resources with information on 5GGV
  • Community annotation for 5GGV at PDBWiki (http://pdbwiki.org)

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