OCA Atlas for 5GJW

5GJW

Membrane Protein

date

Jul 02, 2016

title

Structure Of The Mammalian Voltage-Gated Calcium Channel Cav Complex For Classii Map

authors

J.P.Wu, Z.Yan, Z.Q.Li, Q.Zhou, N.Yan

compound

source

Molecule: Voltage-Dependent L-Type Calcium Channel Subunit
Chain: A
Synonym: Calcium Channel,L Type,Alpha-1 Polypeptide,Isoform Skeletal Muscle,Voltage-Gated Calcium Channel Subunit Alpha

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Voltage-Dependent L-Type Calcium Channel Subunit
Chain: B
Fragment: Unp Residues 80-174
Synonym: Cab1,Calcium Channel Voltage-Dependent Subunit Bet
Engineered: Yes

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Cacnb1, Cacnlb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-2

Molecule: Voltage-Dependent L-Type Calcium Channel Subunit
Chain: C
Fragment: Unp Residues 265-463
Synonym: Cab1,Calcium Channel Voltage-Dependent Subunit Bet
Engineered: Yes

Molecule: Voltage-Dependent Calcium Channel Gamma-1 Subunit
Chain: E
Synonym: Dihydropyridine-Sensitive L-Type,Skeletal Muscle C Channel Subunit Gamma;

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

Molecule: Voltage-Dependent Calcium Channel Subunit Alpha-2
Chain: F
Synonym: Voltage-Gated Calcium Channel Subunit Alpha-2delt

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

3.90 Å

ligand

BMA, CA, ETA, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B
C
E

Primary reference

Structure of the voltage-gated calcium channel Cav1.1 at 3.6 A resolution., Wu J, Yan Z, Li Z, Qian X, Lu S, Dong M, Zhou Q, Yan N, Nature. 2016 Aug 31;537(7619):191-196. doi: 10.1038/nature19321. PMID:27580036

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (450 Kb) [Save to disk]

Biological Unit Coordinates (5gjw.pdb1.gz) 438 Kb

LPC: Ligand-Protein Contacts for 5GJW

CSU: Contacts of Structural Units for 5GJW

Retrieve 5GJW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5GJW from S2C, [Save to disk]

View 5GJW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GJW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gjw_B] [5gjw] [5gjw_A] [5gjw_E] [5gjw_C] [5gjw_F]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 5GJW: [Ca_chan_IQ] [GuKc] [SH3] [VWA ] by SMART

Other resources with information on 5GJW

Community annotation for 5GJW at PDBWiki (http://pdbwiki.org)

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