5GLI Signaling Protein date Jul 11, 2016
title Human Endothelin Receptor Type-B In The Ligand-Free Form
authors W.Shihoya, T.Nishizawa, A.Okuta, K.Tani, Y.Fujiyoshi, N.Dohmae, O. T.Doi
compound source
Molecule: Endothelin Receptor Subtype-B
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Ednrb
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Modified Pfastbac
symmetry Space Group: C 2 2 21
R_factor 0.247 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.980 147.540 107.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand OLA, OLC, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActivation mechanism of endothelin ETB receptor by endothelin-1., Shihoya W, Nishizawa T, Okuta A, Tani K, Dohmae N, Fujiyoshi Y, Nureki O, Doi T, Nature. 2016 Sep 5;537(7620):363-368. doi: 10.1038/nature19319. PMID:27595334
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5gli.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5GLI
  • CSU: Contacts of Structural Units for 5GLI
  • Structure Factors (266 Kb)
  • Retrieve 5GLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GLI from S2C, [Save to disk]
  • Re-refined 5gli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GLI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gli_A] [5gli]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GLI
  • Community annotation for 5GLI at PDBWiki (http://pdbwiki.org)

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