5GLJ Hydrolase date Jul 11, 2016
title Crystal Structure Of Pdz1 Domain Of Human Protein Tyrosine P Ptp-Bas
authors S.O.Lee, B.Ku, S.W.Chi
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 13
Chain: A, B, C, D
Fragment: Pdz1 Domain (Unp Residues 1086-1178)
Synonym: Fas-Associated Protein-Tyrosine Phosphatase 1,Fap- Protein-Tyrosine Phosphatase 1e,Hptpe1,Protein-Tyrosine Pho Ptpl1;
Ec: 3.1.3.48
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn13, Pnp1, Ptp1e, Ptpl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.034 57.571 168.971 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL enzyme Hydrolase E.C.3.1.3.48 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5glj.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5GLJ
  • CSU: Contacts of Structural Units for 5GLJ
  • Structure Factors (617 Kb)
  • Retrieve 5GLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GLJ from S2C, [Save to disk]
  • Re-refined 5glj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GLJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5glj_A] [5glj_C] [5glj_B] [5glj] [5glj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5GLJ: [PDZ ] by SMART
    • Other resources with information on 5GLJ
  • Community annotation for 5GLJ at PDBWiki (http://pdbwiki.org)

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