5GN8 Oxidoreductase date Jul 19, 2016
title Structure Of A 48-Mer Protein Nanocage Fabricated From Its 2 Analogue By Subunit Interface Redesign
authors S.Zhang, J.Zang, G.Zhao, B.Mikami
compound source
Molecule: Ferritin Heavy Chain
Chain: A
Synonym: Ferritin H Subunit,Cell Proliferation-Inducing Gen Protein;
Ec: 1.16.3.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ferritin Heavy Chain
Chain: B
Synonym: Ferritin H Subunit,Cell Proliferation-Inducing Gen Protein;
Ec: 1.16.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: F 4 3 2
R_factor 0.213 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
236.120 236.120 236.120 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.81 Å
ligand CA enzyme Oxidoreductase E.C.1.16.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary reference"Silent" Amino Acid Residues at Key Subunit Interfaces Regulate the Geometry of Protein Nanocages., Zhang S, Zang J, Zhang X, Chen H, Mikami B, Zhao G, ACS Nano. 2016 Nov 22;10(11):10382-10388. Epub 2016 Nov 9. PMID:27934076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (5gn8.pdb1.gz) 2507 Kb
  • LPC: Ligand-Protein Contacts for 5GN8
  • CSU: Contacts of Structural Units for 5GN8
  • Structure Factors (222 Kb)
  • Retrieve 5GN8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GN8 from S2C, [Save to disk]
  • Re-refined 5gn8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GN8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GN8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gn8_B] [5gn8] [5gn8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GN8
  • Community annotation for 5GN8 at PDBWiki (http://pdbwiki.org)

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