5GO7	Protein Binding	date	Jul 26, 2016
title	Linear Tri-Ubiquitin
authors	S.Gao, M.Pan, Y.Zheng
compound		source
Molecule: Ubiquitin Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333 Expression_system_strain: K-12 Expression_system_vector_type: Plasmid
Molecule: D-Ubiquitin Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.219 R_Free 0.310
crystal cell	length a length b length c angle alpha angle beta angle gamma 30.955 31.123 32.180 71.54 77.42 89.44
method	X-Ray Diffraction	resolution	1.80 Å
ligand	DAL, DAR, DAS, DGL, DGN, DHI, DIL, DLE, DLY, DNE, DPN, DPR, DSG, DSN, DTH, DTY, DVA	enzyme
Primary reference	Monomer/Oligomer Quasi-Racemic Protein Crystallography., Gao S, Pan M, Zheng Y, Huang Y, Zheng Q, Sun D, Lu L, Tan X, Tan X, Lan H, Wang J, Wang T, Wang J, Liu L, J Am Chem Soc. 2016 Oct 21. PMID:27768314

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (5go7.pdb1.gz) 40 Kb Biological Unit Coordinates (5go7.pdb2.gz) 14 Kb LPC: Ligand-Protein Contacts for 5GO7 CSU: Contacts of Structural Units for 5GO7 Structure Factors (158 Kb) Retrieve 5GO7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GO7 from S2C, [Save to disk] Re-refined 5go7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GO7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GO7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5go7_A] [5go7_B] [5go7] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5GO7: [UBQ ] by SMART

Other resources with information on 5GO7

Community annotation for 5GO7 at PDBWiki (http://pdbwiki.org)

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