5GOH	Protein Binding	date	Jul 27, 2016
title	Lys33-Linked Di-Ubiquitin
authors	S.Gao, M.Pan, Y.Zheng, L.Liu
compound		source
Molecule: Ubiquitin Chain: A Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: D-Ubiquitin Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.236 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 26.436 29.200 44.232 83.14 86.82 71.18
method	X-Ray Diffraction	resolution	1.95 Å
ligand	DAL, DAR, DAS, DGL, DGN, DHI, DIL, DLE, DLY, DNE, DPN, DPR, DSG, DSN, DTH, DTY, DVA	enzyme
Primary reference	Monomer/Oligomer Quasi-Racemic Protein Crystallography., Gao S, Pan M, Zheng Y, Huang Y, Zheng Q, Sun D, Lu L, Tan X, Tan X, Lan H, Wang J, Wang T, Wang J, Liu L, J Am Chem Soc. 2016 Oct 21. PMID:27768314

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (5goh.pdb1.gz) 28 Kb Biological Unit Coordinates (5goh.pdb2.gz) 14 Kb LPC: Ligand-Protein Contacts for 5GOH CSU: Contacts of Structural Units for 5GOH Structure Factors (252 Kb) Retrieve 5GOH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GOH from S2C, [Save to disk] Re-refined 5goh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GOH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GOH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5goh_D] [5goh_A] [5goh] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5GOH: [UBQ ] by SMART

Other resources with information on 5GOH

Community annotation for 5GOH at PDBWiki (http://pdbwiki.org)

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