5GUF Transferase date Aug 29, 2016
title Structural Insight Into An Intramembrane Enzyme For Archaeal Lipids Biosynthesis
authors W.Cheng, S.Ren
compound source
Molecule: Cdp-Archaeol Synthase
Chain: A
Synonym: Cdp-2,3-Bis-(O-Geranylgeranyl)-Sn-Glycerol Synthas
Ec: 2.7.7.67
Engineered: Yes
Organism_scientific: Aeropyrum Pernix K1
Organism_taxid: 272557
Strain: Atcc 700893 Dsm 11879 Jcm 9820 Nbrc 100138
Gene: Cars, Ape_0433
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: C 2 2 21
R_factor 0.207 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.505 89.249 98.876 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CTP, K, MG enzyme Transferase E.C.2.7.7.67 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic insights into the biosynthesis of CDP-archaeol in membranes., Ren S, Caforio A, Yang Q, Sun B, Yu F, Zhu X, Wang J, Dou C, Fu Q, Huang N, Sun Q, Nie C, Qi S, Gong X, He J, Wei Y, Driessen AJ, Cheng W, Cell Res. 2017 Sep 29. doi: 10.1038/cr.2017.122. PMID:28961231
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5guf.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5GUF
  • CSU: Contacts of Structural Units for 5GUF
  • Structure Factors (209 Kb)
  • Retrieve 5GUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GUF from S2C, [Save to disk]
  • View 5GUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GUF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5guf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GUF
  • Community annotation for 5GUF at PDBWiki (http://pdbwiki.org)

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