5GUW Membrane Protein date Aug 31, 2016
title Complex Of Cytochrome Cd1 Nitrite Reductase And Nitric Oxide In Denitrification Of Pseudomonas Aeruginosa
authors E.Terasaka, H.Sugimoto, Y.Shiro, T.Tosha
compound source
Molecule: Nitric Oxide Reductase Subunit C
Chain: A, C
Fragment: Nitric Oxide Reductase Subunit C
Synonym: Nor Small Subunit,Nitric Oxide Reductase Cytochrom Subunit;
Mutation: Yes
 Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1
Other_details: ?

Molecule: Nitric Oxide Reductase Subunit B
Chain: B, D
Fragment: Nitric Oxide Reductase Subunit B
Synonym: Nor Large Subunit,Nitric Oxide Reductase Cytochrom Subunit;
Ec: 1.7.2.5
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1

Molecule: Nitrite Reductase
Chain: M, N
Fragment: Cd1 Nitrite Reductase
Synonym: Cytochrome Cd1,Cytochrome Oxidase,Hydroxylamine Re
Ec: 1.7.2.1,1.7.99.1
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.871 128.606 127.807 90.00 106.83 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand 10M, CA, CL, DHE, FE, HEC, HEM, O enzyme Oxidoreductase E.C.1.7.2.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • electron transfer activity


    • D, B
  • cytochrome-c oxidase activit...


    • M, N


    Primary referenceDynamics of nitric oxide controlled by protein complex in bacterial system., Terasaka E, Yamada K, Wang PH, Hosokawa K, Yamagiwa R, Matsumoto K, Ishii S, Mori T, Yagi K, Sawai H, Arai H, Sugimoto H, Sugita Y, Shiro Y, Tosha T, Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):9888-9893. doi:, 10.1073/pnas.1621301114. Epub 2017 Aug 28. PMID:28847930
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (773 Kb) [Save to disk]
  • Biological Unit Coordinates (5guw.pdb1.gz) 206 Kb
  • Biological Unit Coordinates (5guw.pdb2.gz) 206 Kb
  • Biological Unit Coordinates (5guw.pdb3.gz) 356 Kb
  • LPC: Ligand-Protein Contacts for 5GUW
  • CSU: Contacts of Structural Units for 5GUW
  • Structure Factors (1930 Kb)
  • Retrieve 5GUW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GUW from S2C, [Save to disk]
    • View 5GUW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GUW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5guw_C] [5guw_M] [5guw_B] [5guw_A] [5guw_D] [5guw_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GUW
  • Community annotation for 5GUW at PDBWiki (http://pdbwiki.org)

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