5GZG Sugar Binding Protein date Sep 28, 2016
title Galectin-8 N-Terminal Domain Carbohydrate Recognition Domain
authors J.Y.Su, Y.L.Si
compound source
Molecule: Galectin-8
Chain: A
Fragment: Carbohydrate Recognition Domain (Unp Residues 1-1
Synonym: Gal-8,Po66 Carbohydrate-Binding Protein,Po66-Cbp,P Carcinoma Tumor Antigen 1,Pcta-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.203 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.127 49.127 159.666 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BGC, GAL, NA, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5gzg.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 5GZG
  • CSU: Contacts of Structural Units for 5GZG
  • Structure Factors (293 Kb)
  • Retrieve 5GZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GZG from S2C, [Save to disk]
  • Re-refined 5gzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GZG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gzg_A] [5gzg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GZG
  • Community annotation for 5GZG at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science