5GZN	Viral Protein Immune System	date	Sep 29, 2016
title	Structure Of Neutralizing Antibody Bound To Zika Envelope Pr
authors	Q.Wang, H.Yang, X.Liu, L.Dai, T.Ma, J.Qi, G.Wong, R.Peng, S.Liu, J.Li J.Song, J.Liu, J.He, H.Yuan, Y.Xiong, Y.Liao, J.Li, J.Yang, Z.Tong, B.Griffin, Y.Bi, M.Liang, X.Xu, G.Cheng, P.Wang, X.Qiu, G.Kobinger J.Yan, G.F.Gao
compound		source
Molecule: Genome Polyprotein Chain: A, B, E, G Fragment: Envelope Protein, Unp Residues 291-699 Engineered: Yes		Organism_scientific: Zika Virus Organism_common: Zikv Organism_taxid: 64320 Strain: Mr 766 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Antibody Heavy Chain Chain: H, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Mammalian Expression Vector Pbgsa Expression_system_taxid: 285261
Molecule: Antibody Light Chain Chain: L, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Mammalian Expression Vector Pbgsa Expression_system_taxid: 285261
symmetry	Space Group: C 2 2 21	R_factor 0.223 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.708 129.385 428.711 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
Gene Ontology	Chain Function Process Component A, G, E, B
Primary reference	Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus., Wang Q, Yang H, Liu X, Dai L, Ma T, Qi J, Wong G, Peng R, Liu S, Li J, Li S, Song J, Liu J, He J, Yuan H, Xiong Y, Liao Y, Li J, Yang J, Tong Z, Griffin BD, Bi Y, Liang M, Xu X, Qin C, Cheng G, Zhang X, Wang P, Qiu X, Kobinger G, Shi Y, Yan J, Gao GF, Sci Transl Med. 2016 Dec 14;8(369):369ra179. PMID:27974667

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (661 Kb) [Save to disk] Biological Unit Coordinates (5gzn.pdb1.gz) 330 Kb Biological Unit Coordinates (5gzn.pdb2.gz) 329 Kb CSU: Contacts of Structural Units for 5GZN Structure Factors (1218 Kb) Retrieve 5GZN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GZN from S2C, [Save to disk] Re-refined 5gzn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GZN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GZN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gzn_B] [5gzn_E] [5gzn_D] [5gzn_L] [5gzn_H] [5gzn_C] [5gzn] [5gzn_G] [5gzn_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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