5H0Q Lipid Binding Protein date Oct 06, 2016
title Crystal Structure Of Lipid Binding Protein Nakanori At 1.5a
authors A.Makino, M.Abe, R.Ishitsuka, M.Murate, T.Kishimoto, S.Sakai, F.Hu Matsuda, Y.Shimada, T.Inaba, H.Miyatake, H.Tanaka, A.Kurahashi, C R.S.Kasai, S.Kubo, N.L.Schieber, N.Dohmae, N.Tochio, K.Hagiwara, Y.Aida, F.Fujimori, T.Kigawa, K.Nishikori, R.G.Parton, A.Kusumi, G.Anderluh, M.Yamashita, T.Kobayashi, P.Greimel, T.Kobayashi
compound source
Molecule: Lipid Binding Protein
Chain: A
Engineered: Yes
Organism_scientific: Grifola Frondosa
Organism_taxid: 5627
Expression_system: Cell-Free Synthesis
symmetry Space Group: P 65
R_factor 0.183 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.763 75.763 92.804 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
note 5H0Q supersedes 5GNN
Primary referenceA novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C., Makino A, Abe M, Ishitsuka R, Murate M, Kishimoto T, Sakai S, Hullin-Matsuda F, Shimada Y, Inaba T, Miyatake H, Tanaka H, Kurahashi A, Pack CG, Kasai RS, Kubo S, Schieber NL, Dohmae N, Tochio N, Hagiwara K, Sasaki Y, Aida Y, Fujimori F, Kigawa T, Nishibori K, Parton RG, Kusumi A, Sako Y, Anderluh G, Yamashita M, Kobayashi T, Greimel P, Kobayashi T, FASEB J. 2016 Aug 4. pii: fj.201500075R. PMID:27492925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (5h0q.pdb1.gz) 102 Kb
  • CSU: Contacts of Structural Units for 5H0Q
  • Structure Factors (323 Kb)
  • Retrieve 5H0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H0Q from S2C, [Save to disk]
  • Re-refined 5h0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5H0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H0Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h0q_A] [5h0q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H0Q
  • Community annotation for 5H0Q at PDBWiki (http://pdbwiki.org)

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