5H1R Transport Protein date Oct 11, 2016
title C. Elegans Inx-6 Gap Junction Channel
authors A.Oshima, K.Tani, Y.Fujiyoshi
compound source
Molecule: Innexin-6
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Synonym: Protein Opu-6
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Inx-6, Opu-6, C36h8.2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G
  • gap junction channel activit...


    • Primary referenceAtomic structure of the innexin-6 gap junction channel determined by cryo-EM., Oshima A, Tani K, Fujiyoshi Y, Nat Commun. 2016 Dec 1;7:13681. doi: 10.1038/ncomms13681. PMID:27905396
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (954 Kb) [Save to disk]
  • Biological Unit Coordinates (5h1r.pdb1.gz) 946 Kb
  • CSU: Contacts of Structural Units for 5H1R
  • Retrieve 5H1R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H1R from S2C, [Save to disk]
    • View 5H1R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H1R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h1r_J] [5h1r_C] [5h1r_A] [5h1r_N] [5h1r_M] [5h1r_D] [5h1r_H] [5h1r_O] [5h1r_K] [5h1r_F] [5h1r_B] [5h1r] [5h1r_G] [5h1r_L] [5h1r_P] [5h1r_E] [5h1r_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H1R
  • Community annotation for 5H1R at PDBWiki (http://pdbwiki.org)

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