5H2D Lipid Binding Protein date Oct 14, 2016
title Crystal Structure Of Osh1 Ord Domain In Complex With Ergoste
authors Y.J.Im, M.K.Manik, H.S.Yang, J.S.Tong
compound source
Molecule: Klla0c04147p
Chain: A
Fragment: Unp Residues 1808-1240
Engineered: Yes
Mutation: Yes
Organism_scientific: Kluyveromyces Lactis
Organism_common: Yeast
Organism_taxid: 284590
Strain: Atcc 8585 Cbs 2359 Dsm 70799 Nbrc 1267 Nrrl Wm37;
Gene: Klla0_c04147g
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Phis-2
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.129 47.207 73.000 90.00 96.24 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ERG, SO4 enzyme
Gene KLLA0
Primary referenceStructure of Yeast OSBP-Related Protein Osh1 Reveals Key Determinants for Lipid Transport and Protein Targeting at the Nucleus-Vacuole Junction., Manik MK, Yang H, Tong J, Im YJ, Structure. 2017 Apr 4;25(4):617-629.e3. doi: 10.1016/j.str.2017.02.010. Epub 2017, Mar 16. PMID:28319008
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (5h2d.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5H2D
  • CSU: Contacts of Structural Units for 5H2D
  • Structure Factors (896 Kb)
  • Retrieve 5H2D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H2D from S2C, [Save to disk]
  • Re-refined 5h2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5H2D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H2D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h2d_A] [5h2d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H2D
  • Community annotation for 5H2D at PDBWiki (http://pdbwiki.org)

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