5H35 Immune System Membrane Protein date Oct 20, 2016
title Crystal Structures Of The Tric Trimeric Intracellular Cation Orthologue From Sulfolobus Solfataricus
authors G.Kasuya, M.Hiraizumi, M.Hattori, O.Nureki
compound source
Molecule: Fab Heavy Chain
Chain: A, F, H
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090

Molecule: Fab Light Chain
Chain: B, G, I
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090

Molecule: Membrane Protein Tric
Chain: C, D, E
Fragment: Unp Residues 1-198
Synonym: Uncharacterized Protein
Engineered: Yes
Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.734 171.391 103.265 90.00 117.94 90.00
method X-Ray Diffractionresolution 2.64 Å
ligand GOL, NA, PX4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, C, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (5h35.pdb1.gz) 298 Kb
  • LPC: Ligand-Protein Contacts for 5H35
  • CSU: Contacts of Structural Units for 5H35
  • Structure Factors (852 Kb)
  • Retrieve 5H35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H35 from S2C, [Save to disk]
  • Re-refined 5h35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H35
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h35_E] [5h35_B] [5h35_A] [5h35] [5h35_G] [5h35_C] [5h35_D] [5h35_H] [5h35_F] [5h35_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H35
  • Community annotation for 5H35 at PDBWiki (http://pdbwiki.org)

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