5H6B Hydrolase date Nov 11, 2016
title Crystal Structure Of A Thermostable Lipase From Marine Strep
authors S.Hou, Z.Zhao, J.Liu
compound source
Molecule: Putative Secreted Lipase
Chain: A
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Streptomyces Sp. W007
Organism_taxid: 1055352
Strain: W007
Gene: Spw_1544
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
symmetry Space Group: P 64
R_factor 0.178 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.730 90.730 70.620 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACT, IMD, ZN enzyme Hydrolase E.C.3.1.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a lipase from Streptomyces sp. strain W007:implications for thermostability and regiospecificity., Zhao Z, Hou S, Lan D, Wang X, Liu J, Khan FI, Wang Y, FEBS J. 2017 Aug 31. doi: 10.1111/febs.14211. PMID:28857479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (5h6b.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (5h6b.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5H6B
  • CSU: Contacts of Structural Units for 5H6B
  • Structure Factors (669 Kb)
  • Retrieve 5H6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H6B from S2C, [Save to disk]
  • View 5H6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H6B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h6b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H6B
  • Community annotation for 5H6B at PDBWiki (http://pdbwiki.org)

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