5H9Q Sugar Binding Protein date Dec 29, 2015
title Crystal Structure Of Human Galectin-7 In Complex With Td139
authors T.J.Hsieh, H.Y.Lin, C.H.Lin
compound source
Molecule: Galectin-7
Chain: A, B
Synonym: Gal-7,Hkl-14,Pi7,P53-Induced Gene 1 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals7, Pig1, Lgals7b
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: Bl21-Gold(De3)Plyss Ag
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.896 64.426 70.616 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand TD2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5h9q.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5H9Q
  • CSU: Contacts of Structural Units for 5H9Q
  • Structure Factors (230 Kb)
  • Retrieve 5H9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H9Q from S2C, [Save to disk]
  • Re-refined 5h9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H9Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h9q_A] [5h9q_B] [5h9q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5H9Q: [GLECT] [Gal-bind_lectin ] by SMART
    • Other resources with information on 5H9Q
  • Community annotation for 5H9Q at PDBWiki (http://pdbwiki.org)

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