5HDT	Cell Cycle	date	Jan 05, 2016
title	Human Cohesin Regulator Pds5b Bound To A Wapl Peptide
authors	Z.Ouyang, D.R.Tomchick, H.Yu
compound		source
Molecule: Sister Chromatid Cohesion Protein Pds5 Homolog B Chain: A, B Fragment: Unp Residues 21-1120 Synonym: Androgen-Induced Proliferation Inhibitor,Androgen- Prostate Proliferative Shutoff-Associated Protein As3; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pds5b, Aprin, As3, Kiaa0979 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi5 Expression_system_cell: Hi5 Expression_system_plasmid: Pfastbacht
Molecule: Wings Apart-Like Protein Homolog Chain: E Synonym: Friend Of Ebna2 Protein,Wapl Cohesin Release Facto Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.216 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.760 162.368 173.061 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.71 Å
ligand	IHP, MSE	enzyme
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1080 Kb) [Save to disk] Biological Unit Coordinates (5hdt.pdb1.gz) 525 Kb Biological Unit Coordinates (5hdt.pdb2.gz) 519 Kb LPC: Ligand-Protein Contacts for 5HDT CSU: Contacts of Structural Units for 5HDT Structure Factors (1696 Kb) Retrieve 5HDT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HDT from S2C, [Save to disk] Re-refined 5hdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HDT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HDT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hdt_A] [5hdt_E] [5hdt] [5hdt_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5HDT

Community annotation for 5HDT at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---