5HGG	Hydrolase Inhibitor	date	Jan 08, 2016
title	Crystal Structure Of Upa In Complex With A Camelid-Derived A Fragment
authors	K.W.Y.Yung, T.Kromann-Hansen, P.A.Andreasen, J.C.K.Ngo
compound		source
Molecule: Urokinase-Type Plasminogen Activator Chain: A, B Fragment: Unp Residues 179-424 Synonym: Upa Ec: 3.4.21.73 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plau Expression_system: Komagataella Pastoris Cbs 7435 Expression_system_taxid: 981350
Molecule: Camelid Derived Antibody Fragment, Nb4 Chain: S, T Engineered: Yes		Organism_scientific: Vicugna Pacos Organism_taxid: 30538 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.167 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 186.985 77.749 61.454 90.00 102.40 90.00
method	X-Ray Diffraction	resolution	1.97 Å
ligand	GOL, MES, SO4, TWN	enzyme	Hydrolase E.C.3.4.21.73 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk] Biological Unit Coordinates (5hgg.pdb1.gz) 249 Kb LPC: Ligand-Protein Contacts for 5HGG CSU: Contacts of Structural Units for 5HGG Structure Factors (1284 Kb) Retrieve 5HGG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HGG from S2C, [Save to disk] Re-refined 5hgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HGG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HGG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hgg_S] [5hgg_B] [5hgg_A] [5hgg_T] [5hgg] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5HGG: [IGv] [Tryp_SPc ] by SMART

Other resources with information on 5HGG

Community annotation for 5HGG at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---