5HIE Transferase Transferase Inhibitor date Jan 11, 2016
title Braf Kinase Domain B3ac Loop Deletion Mutant In Complex With Dabrafenib
authors D.M.Whalen, S.A.Foster, A.Ozen, M.Wongchenko, J.Yin, G.Schaefer, J.Mayfield, J.Chmielecki, P.Stephens, L.Albacker, Y.Yan, K.Song, G.Hatzivassiliou, C.Eigenbrot, C.Yu, A.S.Shaw, G.Manning, N.J.Sk S.G.Hymowitz, S.Malek
compound source
Molecule: Serinethreonine-Protein Kinase B-Raf
Chain: A, B, C, D
Synonym: Proto-Oncogene B-Raf,P94,V-Raf Murine Sarcoma Vira Homolog B1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Braf, Braf1, Rafb1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.413 127.786 83.135 90.00 105.79 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand P06 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk]
  • Biological Unit Coordinates (5hie.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (5hie.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (5hie.pdb3.gz) 88 Kb
  • Biological Unit Coordinates (5hie.pdb4.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5HIE
  • CSU: Contacts of Structural Units for 5HIE
  • Structure Factors (1751 Kb)
  • Retrieve 5HIE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HIE from S2C, [Save to disk]
  • Re-refined 5hie structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HIE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HIE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hie_D] [5hie] [5hie_A] [5hie_C] [5hie_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HIE: [STYKc ] by SMART
  • Other resources with information on 5HIE
  • Community annotation for 5HIE at PDBWiki (http://pdbwiki.org)

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