5HJB Transcription Peptide date Jan 12, 2016
title Af9 Yeats In Complex With Histone H3 Crotonylation At K9
authors Y.Y.Li, D.Zhao, H.P.Guan, H.T.Li
compound source
Molecule: Protein Af-9
Chain: A
Fragment: Yeats Domain, Unp Residues 1-138
Synonym: All1-Fused Gene From Chromosome 9 Protein,Myeloid Or Mixed-Lineage Leukemia Translocated To Chromosome 3 Prot Domain-Containing Protein 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mllt3, Af9, Yeats3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Peptide Of Histone H3.1
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32 2 1
R_factor 0.206 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.595 97.595 39.685 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand KCR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain., Li Y, Sabari BR, Panchenko T, Wen H, Zhao D, Guan H, Wan L, Huang H, Tang Z, Zhao Y, Roeder RG, Shi X, Allis CD, Li H, Mol Cell. 2016 Apr 21;62(2):181-93. doi: 10.1016/j.molcel.2016.03.028. PMID:27105114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (5hjb.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 5HJB
  • CSU: Contacts of Structural Units for 5HJB
  • Structure Factors (123 Kb)
  • Retrieve 5HJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HJB from S2C, [Save to disk]
  • Re-refined 5hjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HJB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hjb] [5hjb_B] [5hjb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HJB
  • Community annotation for 5HJB at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science