5HKW Ligase date Jan 14, 2016
title Crystal Structure Of Apo C-Cbl Tkbd Refined To 2.25 A Resolu
authors S.Lovell, K.P.Battaile, N.Mehzabeen, N.Zhang, A.Cooper, P.Gao, R.P
compound source
Molecule: E3 Ubiquitin-Protein Ligase Cbl
Chain: A, B, C
Fragment: Tyrosine Kinase Binding Domain (Tkbd), Residues 4
Synonym: Casitas B-Lineage Lymphoma Proto-Oncogene,Proto-On Cbl,Ring Finger Protein 55,Signal Transduction Protein Cbl;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbl, Cbl2, Rnf55
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Plyses-Rare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptbsg
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.116 106.523 84.984 90.00 92.13 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand NA enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (5hkw.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (5hkw.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (5hkw.pdb3.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5HKW
  • CSU: Contacts of Structural Units for 5HKW
  • Structure Factors (4525 Kb)
  • Retrieve 5HKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HKW from S2C, [Save to disk]
  • Re-refined 5hkw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HKW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hkw_C] [5hkw] [5hkw_A] [5hkw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HKW
  • Community annotation for 5HKW at PDBWiki (http://pdbwiki.org)

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