5HLB Transferase Transferase Inhibitor date Jan 14, 2016
title E. Coli Pbp1b In Complex With Acyl-Aztreonam And Moenomycin
authors D.T.King, N.C.J.Strynadka
compound source
Molecule: Penicillin-Binding Protein 1b
Chain: A
Synonym: Pbp1b,Murein Polymerase
Ec: 2.4.1.129,3.4.-.-
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Mrcb, Pbpf, Ponb, B0149, Jw0145
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 2 21 21
R_factor 0.225 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.530 64.390 301.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.42 Å
ligand AZR, M0E enzyme Transferase E.C.2.4.1.129 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEscherichia coli Penicillin-Binding Protein 1B: Structural Insights into Inhibition., King DT, Wasney GA, Nosella M, Fong A, Strynadka NC, J Biol Chem. 2016 Nov 29. pii: jbc.M116.718403. PMID:27899450
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (5hlb.pdb1.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 5HLB
  • CSU: Contacts of Structural Units for 5HLB
  • Structure Factors (994 Kb)
  • Retrieve 5HLB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HLB from S2C, [Save to disk]
  • Re-refined 5hlb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HLB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HLB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hlb_A] [5hlb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HLB
  • Community annotation for 5HLB at PDBWiki (http://pdbwiki.org)

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