5HMI Ligase Ligase Inhibitor date Jan 16, 2016
title Hdm2 In Complex With A 3,3-Disubstituted Piperidine
authors G.Scapin
compound source
Molecule: E3 Ubiquitin-Protein Ligase Mdm2
Chain: A, B
Synonym: Double Minute 2 Protein,Hdm2,Oncoprotein Mdm2,P53- Protein Mdm2;
Ec: 6.3.2.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.473 38.915 132.505 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand 62T, SO4 enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of Novel 3,3-Disubstituted Piperidines as Orally Bioavailable, Potent, and Efficacious HDM2-p53 Inhibitors., Bogen SL, Pan W, Gibeau CR, Lahue BR, Ma Y, Nair LG, Seigel E, Shipps GW Jr, Tian Y, Wang Y, Lin Y, Liu M, Liu S, Mirza A, Wang X, Lipari P, Seidel-Dugan C, Hicklin DJ, Bishop WR, Rindgen D, Nomeir A, Prosise W, Reichert P, Scapin G, Strickland C, Doll RJ, ACS Med Chem Lett. 2016 Jan 20;7(3):324-9. doi: 10.1021/acsmedchemlett.5b00472., eCollection 2016 Mar 10. PMID:26985323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (5hmi.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (5hmi.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (5hmi.pdb3.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 5HMI
  • CSU: Contacts of Structural Units for 5HMI
  • Structure Factors (607 Kb)
  • Retrieve 5HMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HMI from S2C, [Save to disk]
  • Re-refined 5hmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HMI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hmi] [5hmi_A] [5hmi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HMI
  • Community annotation for 5HMI at PDBWiki (http://pdbwiki.org)

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