5HOW Protein Fibril date Jan 19, 2016
title X-Ray Crystallographic Structure Of An Abeta 17-36 Beta-Hair Lv(Phi)Faedcgsnkcaii(Sar)L(Orn)V
authors A.G.Kreutzer, J.S.Nowick, R.K.Spencer
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A, B, C, D, E, F
Fragment: Unp Residues 687-707
Synonym: Abpp,Appi,App,Alzheimer Disease Amyloid Protein,Ce Vascular Amyloid Peptide,Cvap,Prea4,Protease Nexin-II,Pn-II
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.234 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.310 97.310 97.621 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand ORN, PHI, SAR enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceX-ray Crystallographic Structures of a Trimer, Dodecamer, and Annular Pore Formed by an Abeta17-36 beta-Hairpin., Kreutzer AG, Hamza IL, Spencer RK, Nowick JS, J Am Chem Soc. 2016 Apr 6;138(13):4634-42. doi: 10.1021/jacs.6b01332. Epub 2016, Mar 29. PMID:26967810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5how.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (5how.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (5how.pdb3.gz) 62 Kb
  • Biological Unit Coordinates (5how.pdb4.gz) 32 Kb
  • Biological Unit Coordinates (5how.pdb5.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5HOW
  • CSU: Contacts of Structural Units for 5HOW
  • Structure Factors (346 Kb)
  • Retrieve 5HOW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HOW from S2C, [Save to disk]
  • Re-refined 5how structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HOW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HOW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5how_D] [5how_F] [5how_C] [5how_B] [5how_E] [5how] [5how_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HOW
  • Community annotation for 5HOW at PDBWiki (http://pdbwiki.org)

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