5HPP De Novo Protein date Jan 20, 2016
title Crystal Structure Of A Macrocyclic Beta-Sheet Peptide Derive Transthyretin (106-121) - (Orn)Tia(Maa)Lls(Orn)S(Phi)Sttav
authors S.Yoo, A.G.Kreutzer, J.S.Nowick
compound source
Molecule: Orn-Thr-Ile-Ala-Maa-Leu-Leu-Ser-Orn-Ser-Phi-Ser-T Ala-Val;
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.159 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.300 42.300 16.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.08 Å
ligand CL, MAA, ORN, PHI enzyme
Primary referenceSquare channels formed by a peptide derived from transthyretin., Yoo S, Kreutzer AG, Truex NL, Nowick JS, Chem Sci. 2016 Dec 1;7(12):6946-6951. doi: 10.1039/c6sc01927g. Epub 2016 Aug 1. PMID:28451128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (5hpp.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 5HPP
  • CSU: Contacts of Structural Units for 5HPP
  • Structure Factors (28 Kb)
  • Retrieve 5HPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HPP from S2C, [Save to disk]
  • Re-refined 5hpp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HPP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hpp] [5hpp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HPP
  • Community annotation for 5HPP at PDBWiki (http://pdbwiki.org)

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