5HQ2 | Transferase Dna | date | Jan 21, 2016 |
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title | Structural Model Of Set8 Histone H4 Lys20 Methyltransferase Nucleosome Core Particle | ||||||||||||||||||||||||||||||
authors | G.Tavarekere, R.K.Mcginty, S.Tan | ||||||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||||||
Molecule: Histone H3.2 Chain: A Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_plasmid: Pet3d | ||||||||||||||||||||||||||||||
Molecule: Histone H4 Chain: B Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||||||
Molecule: Histone H2a Chain: G Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Hist1h2aj, Loc494591 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||||||
Molecule: Histone H2b 1.1 Chain: H Synonym: H2b1.1 Engineered: Yes |
Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_plasmid: Pet3a | ||||||||||||||||||||||||||||||
Molecule: Dna (149-Mer) Chain: I Engineered: Yes |
Organism_scientific: Synthetic Construct Organism_taxid: 32630 Gene: Widom 601 Nucleosome Positioning Sequence Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_plasmid: Plasmid | ||||||||||||||||||||||||||||||
Molecule: Dna (149-Mer) Chain: J Engineered: Yes |
Organism_scientific: Synthetic Construct Organism_taxid: 32630 Gene: Widom 601 Nucleosome Positioning Sequence Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_plasmid: Plasmid | ||||||||||||||||||||||||||||||
Molecule: Guanine Nucleotide Exchange Factor Srm1 Chain: K Synonym: Pheromone Response Pathway Component Srm1,Pre-Mrna Processing Protein 20,Regulator Of Chromosome Condensation, Of Receptor Mutations 1,Mrna Transport Protein 1; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Srm1, Mtr1, Prp20, Ygl097w Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_plasmid: Pst50tr | ||||||||||||||||||||||||||||||
Molecule: N-Lysine Methyltransferase Setd8 Chain: M Synonym: H4-K20-Hmtase Setd8,Histone-Lysine N-Methyltransfe Setd8,Lysine N-Methyltransferase 5a,Prset Domain-Containin 07,Prset07,Set Domain-Containing Protein 8; Ec: 2.1.1.-,2.1.1.43 Engineered: Yes Mutation: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Setd8, Kmt5a, Prset7, Set07, Set8 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)Plyss Expression_system_plasmid: Pst50tr | ||||||||||||||||||||||||||||||
symmetry | Space Group: C 2 2 21 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 4.50 Å | ||||||||||||||||||||||||||||
ligand | enzyme | Transferase E.C.2.1.1 BRENDA | |||||||||||||||||||||||||||||
Gene Ontology |
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Primary reference | Multivalent Interactions by the Set8 Histone Methyltransferase With Its Nucleosome Substrate., Girish TS, McGinty RK, Tan S, J Mol Biol. 2016 Apr 24;428(8):1531-43. doi: 10.1016/j.jmb.2016.02.025. Epub 2016, Mar 4. PMID:26953260 |
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