5HQP Oxidoreductase Chaperone date Jan 22, 2016
title Crystal Structure Of The Erp44-Peroxiredoxin 4 Complex
authors K.Yang, D.F.Li, X.Wang, C.C.Wang
compound source
Molecule: Peroxiredoxin-4
Chain: A, B
Synonym: Antioxidant Enzyme Aoe372,Aoe37-2,Peroxiredoxin Iv Thioredoxin Peroxidase Ao372,Thioredoxin-Dependent Peroxide A0372;
Ec: 1.11.1.15
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prdx4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30

Molecule: Endoplasmic Reticulum Resident Protein 44
Chain: C, D
Synonym: Erp44,Thioredoxin Domain-Containing Protein 4
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erp44, Kiaa0573, Txndc4, Unq532pro1075
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: C 2 2 21
R_factor 0.235 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.289 198.979 225.959 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Oxidoreductase E.C.1.11.1.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity
  • thioredoxin peroxidase activ...
  • antioxidant activity
  • peroxiredoxin activity


  • D, C


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]
  • Biological Unit Coordinates (5hqp.pdb1.gz) 304 Kb
  • CSU: Contacts of Structural Units for 5HQP
  • Structure Factors (635 Kb)
  • Retrieve 5HQP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HQP from S2C, [Save to disk]
  • Re-refined 5hqp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HQP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HQP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hqp_B] [5hqp_D] [5hqp] [5hqp_C] [5hqp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HQP
  • Community annotation for 5HQP at PDBWiki (http://pdbwiki.org)

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