5HVX Transport Protein date Jan 28, 2016
title Full Length Wild-Type Open-Form Sodium Channel Navms
authors A.Sula, J.E.Booker, C.E.Naylor, B.A.Wallace
compound source
Molecule: Ion Transport Protein
Chain: A
Engineered: Yes
 Organism_scientific: Magnetococcus Marinus (Strain Atcc Baa Jcm 17883 Mc-1);
Organism_taxid: 156889
Strain: Atcc Baa-1437 Jcm 17883 Mc-1
Gene: Mmc1_0798
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Cd41
symmetry Space Group: I 4 2 2
R_factor 0.207 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.000 109.000 210.590 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand 12P, 2CV, EDO, MES, NA enzyme
Gene MMC1
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity
  • cation channel activity


    • Primary referenceThe complete structure of an activated open sodium channel., Sula A, Booker J, Ng LC, Naylor CE, DeCaen PG, Wallace BA, Nat Commun. 2017 Feb 16;8:14205. doi: 10.1038/ncomms14205. PMID:28205548
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5hvx.pdb1.gz) 345 Kb
  • LPC: Ligand-Protein Contacts for 5HVX
  • CSU: Contacts of Structural Units for 5HVX
  • Structure Factors (1580 Kb)
  • Retrieve 5HVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HVX from S2C, [Save to disk]
  • Re-refined 5hvx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HVX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hvx] [5hvx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HVX
  • Community annotation for 5HVX at PDBWiki (http://pdbwiki.org)

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