5HWY Membrane Protein date Jan 29, 2016
title Structural Mechanisms Of Extracellular Ion Exchange And Indu Binding-Site Occlusion In The Sodium-Calcium Exchanger Ncx_ With 10 Mm Na+ And Zero Ca2+
authors J.Liao, Y.X.Jiang, J.D.Faraldo-Gomez
compound source
Molecule: Uncharacterized Membrane Protein Mj0091
Chain: A
Fragment: Unp Residues 1-300
Engineered: Yes
Mutation: Yes
 Organism_scientific: Methanocaldococcus Jannaschii (Strain 43067 Dsm 2661 Jal-1 Jcm 10045 Nbrc 100440);
Organism_taxid: 243232
Strain: Atcc 43067 Dsm 2661 Jal-1 Jcm 10045 Nbrc 10
Gene: Mj0091
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.213 71.966 95.633 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 1PE, ACT, MYS, NA, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • calcium, potassium:sodium an...


    • Primary referenceStructural insight into the ion-exchange mechanism of the sodium/calcium exchanger., Liao J, Li H, Zeng W, Sauer DB, Belmares R, Jiang Y, Science. 2012 Feb 10;335(6069):686-90. PMID:22323814
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5hwy.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5HWY
  • CSU: Contacts of Structural Units for 5HWY
  • Structure Factors (245 Kb)
  • Retrieve 5HWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HWY from S2C, [Save to disk]
  • Re-refined 5hwy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HWY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hwy_A] [5hwy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HWY
  • Community annotation for 5HWY at PDBWiki (http://pdbwiki.org)

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