5I05 Signaling Protein date Feb 03, 2016
title Crystal Structure Of Human Bmp9 At 1.87 A Resolution
authors T.Saito, M.Bokhove, L.Jovine
compound source
Molecule: Growthdifferentiation Factor 2
Chain: A
Fragment: Unp Residues 320-429
Synonym: Gdf-2,Bone Morphogenetic Protein 9,Bmp-9
Engineered: Yes
Other_details: Mature Bmp9
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Endothelial
Gene: Gdf2, Bmp9
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
Expression_system_atcc_number: Crl-3022
Expression_system_plasmid: Phlsec
symmetry Space Group: I 41 2 2
R_factor 0.214 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.060 71.060 145.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1., Saito T, Bokhove M, Croci R, Zamora-Caballero S, Han L, Letarte M, de Sanctis D, Jovine L, Cell Rep. 2017 May 30;19(9):1917-1928. doi: 10.1016/j.celrep.2017.05.011. PMID:28564608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5i05.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 5I05
  • CSU: Contacts of Structural Units for 5I05
  • Structure Factors (194 Kb)
  • Retrieve 5I05 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I05 from S2C, [Save to disk]
  • Re-refined 5i05 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I05 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I05
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i05_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I05
  • Community annotation for 5I05 at PDBWiki (http://pdbwiki.org)

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