5I20	Membrane Protein	date	Feb 08, 2016
title	Crystal Structure Of Protein
authors	R.Ishitani, O.Nureki
compound		source
Molecule: Uncharacterized Protein Chain: A, B, C, D, E, F Engineered: Yes		Organism_scientific: Starkeya Novella (Strain Atcc 8093 D Ccm 1077 Iam 12100 Nbrc 12443 Ncib 9113); Organism_taxid: 639283 Strain: Atcc 8093 Dsm 506 Ccm 1077 Iam 12100 Nbrc 1 Ncib 9113; Gene: Snov_2734 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41 (De3) Delta-Acrb Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet Variant
symmetry	Space Group: P 1 2 1	R_factor 0.226 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.840 84.650 112.250 90.00 108.46 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	OLC, SO4	enzyme
Gene	SNOV
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural basis for amino acid export by DMT superfamily transporter YddG., Tsuchiya H, Doki S, Takemoto M, Ikuta T, Higuchi T, Fukui K, Usuda Y, Tabuchi E, Nagatoishi S, Tsumoto K, Nishizawa T, Ito K, Dohmae N, Ishitani R, Nureki O, Nature. 2016 May 30;534(7607):417-20. doi: 10.1038/nature17991. PMID:27281193

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (493 Kb) [Save to disk] Biological Unit Coordinates (5i20.pdb1.gz) 88 Kb Biological Unit Coordinates (5i20.pdb2.gz) 87 Kb Biological Unit Coordinates (5i20.pdb3.gz) 87 Kb Biological Unit Coordinates (5i20.pdb4.gz) 85 Kb Biological Unit Coordinates (5i20.pdb5.gz) 90 Kb Biological Unit Coordinates (5i20.pdb6.gz) 66 Kb LPC: Ligand-Protein Contacts for 5I20 CSU: Contacts of Structural Units for 5I20 Structure Factors (683 Kb) Retrieve 5I20 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5I20 from S2C, [Save to disk] Re-refined 5i20 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5I20 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5I20

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5i20] [5i20_B] [5i20_F] [5i20_C] [5i20_E] [5i20_A] [5i20_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5I20

Community annotation for 5I20 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---