5I2S Viral Protein date Feb 09, 2016
title Prefusion Form Of The Vesicular Stomatitis Virus Glycoprotei Ectodomain
authors S.Roche, S.Bressanelli
compound source
Molecule: Glycoprotein G
Chain: A
Organism_scientific: Vesicular Stomatitis Indiana Virus (St Mudd-Summers);
Organism_common: Vsiv
Organism_taxid: 11279
Strain: Mudd-Summers
symmetry Space Group: P 6 2 2
R_factor 0.181 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.510 120.510 183.130 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand NAG, YB enzyme
note 5I2S supersedes 2J6J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the prefusion form of the vesicular stomatitis virus glycoprotein G., Roche S, Rey FA, Gaudin Y, Bressanelli S, Science. 2007 Feb 9;315(5813):843-8. PMID:17289996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5i2s.pdb1.gz) 413 Kb
  • LPC: Ligand-Protein Contacts for 5I2S
  • CSU: Contacts of Structural Units for 5I2S
  • Structure Factors (216 Kb)
  • Retrieve 5I2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I2S from S2C, [Save to disk]
  • Re-refined 5i2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I2S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i2s_A] [5i2s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I2S
  • Community annotation for 5I2S at PDBWiki (http://pdbwiki.org)

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