5I4Z Transcription date Feb 13, 2016
title Structure Of Apo Omomyc
authors W.Koelmel, L.A.Jung, J.Kuper, M.Eilers, C.Kisker
compound source
Molecule: Myc Proto-Oncogene Protein
Chain: A, B
Fragment: Omomyc, Unp Residues 348-439
Synonym: Omomyc,Class E Basic Helix-Loop-Helix Protein 39,B Proto-Oncogene C-Myc,Transcription Factor P64;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myc, Bhlhe39
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 2 2
R_factor 0.173 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.700 65.700 149.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CL, GOL, K enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors., Jung LA, Gebhardt A, Koelmel W, Ade CP, Walz S, Kuper J, von Eyss B, Letschert S, Redel C, d'Artista L, Biankin A, Zender L, Sauer M, Wolf E, Evan G, Kisker C, Eilers M, Oncogene. 2016 Oct 17. doi: 10.1038/onc.2016.354. PMID:27748763
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5i4z.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5I4Z
  • CSU: Contacts of Structural Units for 5I4Z
  • Structure Factors (1537 Kb)
  • Retrieve 5I4Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I4Z from S2C, [Save to disk]
  • Re-refined 5i4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5I4Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5I4Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i4z] [5i4z_B] [5i4z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I4Z: [HLH ] by SMART
    • Other resources with information on 5I4Z
  • Community annotation for 5I4Z at PDBWiki (http://pdbwiki.org)

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