5I50 Transcription date Feb 13, 2016
title Structure Of Omomyc Bound To Double-Stranded Dna
authors W.Koelmel, L.A.Jung, J.Kuper, M.Eilers, C.Kisker
compound source
Molecule: Myc Proto-Oncogene Protein
Chain: A, B
Fragment: Omomyc, Unp Residues 350-439
Synonym: Class E Basic Helix-Loop-Helix Protein 39,Bhlhe39, Oncogene C-Myc,Transcription Factor P64;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myc, Bhlhe39
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Pcpapcpcpcpgpgptpcpapcpgptpgpgpcpcptpa -3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Pgptpgptpapgpgpcpcpapcpgptpgpapcpcpgpg -3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.538 95.545 64.944 90.00 105.90 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors., Jung LA, Gebhardt A, Koelmel W, Ade CP, Walz S, Kuper J, von Eyss B, Letschert S, Redel C, d'Artista L, Biankin A, Zender L, Sauer M, Wolf E, Evan G, Kisker C, Eilers M, Oncogene. 2016 Oct 17. doi: 10.1038/onc.2016.354. PMID:27748763
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (5i50.pdb1.gz) 104 Kb
  • CSU: Contacts of Structural Units for 5I50
  • Structure Factors (795 Kb)
  • Retrieve 5I50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I50 from S2C, [Save to disk]
  • Re-refined 5i50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I50
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i50_C] [5i50_B] [5i50_D] [5i50_A] [5i50]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I50: [HLH ] by SMART
  • Other resources with information on 5I50
  • Community annotation for 5I50 at PDBWiki (http://pdbwiki.org)

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