5I7J Antimicrobial Protein date Feb 17, 2016
title Crystal Structure Of Human Splunc1 Disulfide Mutant M3 (I76c
authors W.G.Walton, M.R.Redinbo
compound source
Molecule: Bpi Fold-Containing Family A Member 1
Chain: A, B
Synonym: Lung-Specific Protein X,Nasopharyngeal Carcinoma-R Protein,Palate Lung And Nasal Epithelium Clone Protein,Secr Protein In Upper Respiratory Tracts,Short Plunc1,Splunc1,Tr Epithelium-Enriched Protein,Von Ebner Protein Hl;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bpifa1, Lunx, Nasg, Plunc, Splunc1, Spurt, Unq787pro
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.200 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.778 206.163 117.649 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.54 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Features Essential to the Antimicrobial Functions of Human SPLUNC1., Walton WG, Ahmad S, Little MS, Kim CS, Tyrrell J, Lin Q, Di YP, Tarran R, Redinbo MR, Biochemistry. 2016 May 31;55(21):2979-91. doi: 10.1021/acs.biochem.6b00271. Epub , 2016 May 17. PMID:27145151
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (5i7j.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5i7j.pdb2.gz) 31 Kb
  • CSU: Contacts of Structural Units for 5I7J
  • Structure Factors (250 Kb)
  • Retrieve 5I7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I7J from S2C, [Save to disk]
  • Re-refined 5i7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I7J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i7j_B] [5i7j_A] [5i7j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I7J
  • Community annotation for 5I7J at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science