5I7K	Antimicrobial Protein	date	Feb 17, 2016
title	Crystal Structure Of Human Splunc1 Dolphin Mutant D1 (G58a, G62e, G63d, G66d, I67t)
authors	W.G.Walton, M.R.Redinbo
compound		source
Molecule: Bpi Fold-Containing Family A Member 1 Chain: A, B Synonym: Lung-Specific Protein X,Nasopharyngeal Carcinoma-R Protein,Palate Lung And Nasal Epithelium Clone Protein,Secr Protein In Upper Respiratory Tracts,Short Plunc1,Splunc1,Tr Epithelium-Enriched Protein,Von Ebner Protein Hl; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bpifa1, Lunx, Nasg, Plunc, Splunc1, Spurt, Unq787pro Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.212 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.027 204.927 118.652 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.55 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Features Essential to the Antimicrobial Functions of Human SPLUNC1., Walton WG, Ahmad S, Little MS, Kim CS, Tyrrell J, Lin Q, Di YP, Tarran R, Redinbo MR, Biochemistry. 2016 May 31;55(21):2979-91. doi: 10.1021/acs.biochem.6b00271. Epub , 2016 May 17. PMID:27145151

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (5i7k.pdb1.gz) 31 Kb Biological Unit Coordinates (5i7k.pdb2.gz) 32 Kb Biological Unit Coordinates (5i7k.pdb3.gz) 61 Kb CSU: Contacts of Structural Units for 5I7K Structure Factors (249 Kb) Retrieve 5I7K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5I7K from S2C, [Save to disk] Re-refined 5i7k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5I7K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5I7K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5i7k] [5i7k_B] [5i7k_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5I7K

Community annotation for 5I7K at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---