5I9V Transferase date Feb 21, 2016
title Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kina Ags
authors D.Kudlinzki, V.L.Linhard, S.L.Gande, S.Sreeramulu, K.Saxena, S.He G.Medard, B.Kuester, H.Schwalbe
compound source
Molecule: Ephrin Type-A Receptor 2
Chain: A
Fragment: Unp Residues 596-900
Synonym: Epithelial Cell Kinase,Tyrosine-Protein Kinase Rec
Ec: 2.7.10.1
Engineered: Yes
Other_details: Ligand Id Ags: Atpgammas
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha2, Eck
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
symmetry Space Group: P 1 21 1
R_factor 0.163 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.429 104.535 39.362 90.00 94.06 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand AGS enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChemical proteomics and structural biology define EPHA2 inhibition by clinical kinase drugs., Heinzlmeir S, Kudlinzki D, Sreeramulu S, Klaeger S, Gande SL, Linhard V, Wilhelm M, Qiao H, Helm D, Ruprecht B, Saxena K, Medard G, Schwalbe H, Kuster B, ACS Chem Biol. 2016 Oct 21. PMID:27768280
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (5i9v.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5I9V
  • CSU: Contacts of Structural Units for 5I9V
  • Structure Factors (404 Kb)
  • Retrieve 5I9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I9V from S2C, [Save to disk]
  • Re-refined 5i9v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I9V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i9v_A] [5i9v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I9V: [TyrKc ] by SMART
  • Other resources with information on 5I9V
  • Community annotation for 5I9V at PDBWiki (http://pdbwiki.org)

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