5IMX Transferase Transferase Inhibitor date Mar 07, 2016
title Anaplastic Lymphoma Kinase (Alk) Catalytic Domain Complexed Inhibitor 3-Sulfonylpyrazol-4-Amino Pyrimidine
authors C.Wang, P.Zhang, J.Dong
compound source
Molecule: Alk Tyrosine Kinase Receptor
Chain: A
Fragment: Unp Residues 1093-1411
Synonym: Anaplastic Lymphoma Kinase
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alk
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.698 56.759 104.556 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.12 Å
ligand CZ4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of novel 3-sulfonylpyrazol-4-amino pyrimidines as potent anaplastic lymphoma kinase (ALK) inhibitors., Zhang P, Dong J, Zhong B, Zhang D, Yuan H, Jin C, Xu X, Li H, Zhou Y, Liang Z, Ji M, Xu T, Song G, Zhang L, Chen G, Meng X, Sun D, Shih J, Zhang R, Hou G, Wang C, Jin Y, Yang Q, Bioorg Med Chem Lett. 2016 Apr 15;26(8):1910-8. doi: 10.1016/j.bmcl.2016.03.017. , Epub 2016 Mar 7. PMID:26979157
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5imx.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5IMX
  • CSU: Contacts of Structural Units for 5IMX
  • Structure Factors (202 Kb)
  • Retrieve 5IMX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IMX from S2C, [Save to disk]
  • Re-refined 5imx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IMX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IMX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5imx_A] [5imx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5IMX: [TyrKc ] by SMART
  • Other resources with information on 5IMX
  • Community annotation for 5IMX at PDBWiki (http://pdbwiki.org)

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