5IMY	Toxin Toxin Receptor	date	Mar 07, 2016
title	Trapped Toxin
authors	S.L.Lawrence, C.J.Morton, M.W.Parker
compound		source
Molecule: Vaginolysin Chain: A, B Engineered: Yes		Organism_scientific: Gardnerella Vaginalis Organism_taxid: 2702 Gene: Vly, Vly Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cd59 Glycoprotein Chain: C, D Synonym: 1f5 Antigen,20 Kda Homologous Restriction Factor,H Inhibitory Protein,Mac-Ip,Mem43 Antigen,Membrane Attack Com Inhibition Factor,Macif,Membrane Inhibitor Of Reactive Lysi Protectin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd59, Mic11, Min1, Min2, Min3, Msk21 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.234 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.894 141.713 106.732 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Structural Basis for Receptor Recognition by the Human CD59-Responsive Cholesterol-Dependent Cytolysins., Lawrence SL, Gorman MA, Feil SC, Mulhern TD, Kuiper MJ, Ratner AJ, Tweten RK, Morton CJ, Parker MW, Structure. 2016 Sep 6;24(9):1488-1498. doi: 10.1016/j.str.2016.06.017. Epub 2016 , Aug 4. PMID:27499440

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk] Biological Unit Coordinates (5imy.pdb1.gz) 333 Kb CSU: Contacts of Structural Units for 5IMY Structure Factors (1467 Kb) Retrieve 5IMY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IMY from S2C, [Save to disk] Re-refined 5imy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5IMY

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5imy_D] [5imy_B] [5imy_C] [5imy] [5imy_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5IMY: [LU ] by SMART

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