5IR4 Oxidoreductase date Mar 12, 2016
title Crystal Structure Of Wild-Type Bacterial Lipoxygenase From P Aeruginosa Pa-Lox With Space Group C2221 At 1.48 A Resoluti
authors J.Kalms, S.Banthiya, E.Galemou Yoga, H.Kuhn, P.Scheerer
compound source
Molecule: Arachidonate 15-Lipoxygenase
Chain: A
Synonym: 15-Loxm Linoleate 13-Lipoxygenase
Ec: 1.13.11.12, 1.13.11.13
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Loxa, Pa1169
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.136 R_Free 0.155
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.744 97.391 153.839 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand CL, FE2, GOL, MG, PEG, ZPE enzyme Oxidoreductase E.C.1.13.11.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional basis of phospholipid oxygenase activity of bacterial lipoxygenase from Pseudomonas aeruginosa., Banthiya S, Kalms J, Galemou Yoga E, Ivanov I, Carpena X, Hamberg M, Kuhn H, Scheerer P, Biochim Biophys Acta. 2016 Aug 5;1861(11):1681-1692. doi:, 10.1016/j.bbalip.2016.08.002. PMID:27500637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]
  • Biological Unit Coordinates (5ir4.pdb1.gz) 236 Kb
  • LPC: Ligand-Protein Contacts for 5IR4
  • CSU: Contacts of Structural Units for 5IR4
  • Structure Factors (7153 Kb)
  • Retrieve 5IR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IR4 from S2C, [Save to disk]
  • Re-refined 5ir4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IR4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ir4_A] [5ir4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IR4
  • Community annotation for 5IR4 at PDBWiki (http://pdbwiki.org)

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