5IRC	Protein Binding	date	Mar 12, 2016
title	P190a Gap Domain Complex With Rhoa
authors	U.Derewenda, Z.Derewenda
compound		source
Molecule: Rho Gtpase-Activating Protein 35 Chain: A, B Synonym: Gap-Associated Protein P190,Glucocorticoid Recepto Binding Factor 1; Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Arhgap35, Grlf1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Transforming Protein Rhoa Chain: F, D Synonym: Rho Cdna Clone 12,H12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rhoa, Arh12, Arha, Rho12 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 21 21 21	R_factor 0.170 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.026 112.322 147.611 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	CL, CSX, GDP, MG, MGF	enzyme
Gene Ontology	Chain Function Process Component A, B F, D
Primary reference	Deciphering the molecular and functional basis of RhoGAP family proteins: A systematic approach towards selective inactivation of Rho family proteins., Amin E, Jaiswal M, Derewenda U, Reis K, Nouri K, Koessmeier KT, Aspenstrom P, Somlyo AV, Dvorsky R, Ahmadian MR, J Biol Chem. 2016 Aug 1. pii: jbc.M116.736967. PMID:27481945

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk] Biological Unit Coordinates (5irc.pdb1.gz) 135 Kb Biological Unit Coordinates (5irc.pdb2.gz) 133 Kb Biological Unit Coordinates (5irc.pdb3.gz) 265 Kb LPC: Ligand-Protein Contacts for 5IRC CSU: Contacts of Structural Units for 5IRC Structure Factors (2215 Kb) Retrieve 5IRC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IRC from S2C, [Save to disk] Re-refined 5irc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IRC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IRC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5irc_A] [5irc_F] [5irc] [5irc_D] [5irc_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5IRC: [RHO] [RhoGAP ] by SMART

Other resources with information on 5IRC

Community annotation for 5IRC at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---