5ITH Rna Binding Protein Dna date Mar 16, 2016
title Tia-1 Rrm2 Recognition Of Target Oligonucleotide
authors S.Waris, J.A.Wilce, M.C.Wilce
compound source
Molecule: Nucleolysin Tia-1 Isoform P40
Chain: A
Fragment: Unp Residues 93-183
Synonym: Rna-Binding Protein Tia-1,T-Cell-Restricted Intrac Antigen-1,Tia-1,P40-Tia-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tia1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Apcptpcpctptptptpt)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 65
R_factor 0.228 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.430 45.430 84.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.31 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTIA-1 RRM23 binding and recognition of target oligonucleotides., Waris S, Garcia-Maurino SM, Sivakumaran A, Beckham SA, Loughlin FE, Gorospe M, Diaz-Moreno I, Wilce MCJ, Wilce JA, Nucleic Acids Res. 2017 May 5;45(8):4944-4957. doi: 10.1093/nar/gkx102. PMID:28184449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (5ith.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 5ITH
  • Structure Factors (40 Kb)
  • Retrieve 5ITH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ITH from S2C, [Save to disk]
  • Re-refined 5ith structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ITH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ITH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ith] [5ith_A] [5ith_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ITH
  • Community annotation for 5ITH at PDBWiki (http://pdbwiki.org)

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