5ITZ	Structural Protein	date	Mar 17, 2016
title	Crystal Structure Of The Sac Domain Of Cpap In A Complex Wit And Darpin
authors	A.Sharma, M.O.Steinmetz
compound		source
Molecule: Tubulin Alpha-1b Chain Chain: A Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913
Molecule: Tubulin Beta-2b Chain Chain: B		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913
Molecule: Centromere Protein J Chain: D Synonym: Cenp-J,Centrosomal P4.1-Associated Protein,Lag-3-A Protein,Lyst-Interacting Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cenpj, Cpap, Lap, Lip1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Designed Ankyrin Repeat Protein (Darpin) D1 Chain: F Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: P 1 21 1	R_factor 0.177 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.080 85.340 98.690 90.00 91.77 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	GDP, GTP, LOC, MG	enzyme
Gene Ontology	Chain Function Process Component A B D
Primary reference	Centriolar CPAP/SAS-4 Imparts Slow Processive Microtubule Growth., Sharma A, Aher A, Dynes NJ, Frey D, Katrukha EA, Jaussi R, Grigoriev I, Croisier M, Kammerer RA, Akhmanova A, Gonczy P, Steinmetz MO, Dev Cell. 2016 May 23;37(4):362-76. doi: 10.1016/j.devcel.2016.04.024. PMID:27219064

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk] Biological Unit Coordinates (5itz.pdb1.gz) 329 Kb LPC: Ligand-Protein Contacts for 5ITZ CSU: Contacts of Structural Units for 5ITZ Structure Factors (446 Kb) Retrieve 5ITZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ITZ from S2C, [Save to disk] Re-refined 5itz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ITZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ITZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5itz_D] [5itz_B] [5itz_A] [5itz] [5itz_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5ITZ: [ANK] [Tubulin] [Tubulin_C ] by SMART

Other resources with information on 5ITZ

Community annotation for 5ITZ at PDBWiki (http://pdbwiki.org)

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