5IUT Oxidoreductase date Mar 18, 2016
title Structure Of P450 2b4 F202w Mutant
authors H.H.Jang, J.R.Halpert, M.B.Shah
compound source
Molecule: Cytochrome P450 2b4
Chain: A
Fragment: Unp Residues 30-491
Synonym: Cypiib4,Cytochrome P450 Isozyme 2,Cytochrome P450 Cytochrome P450 Type B0,Cytochrome P450 Type B1;
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Cyp2b4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk
symmetry Space Group: P 31 2 1
R_factor 0.216 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.165 91.165 151.137 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.34 Å
ligand 32M, HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEffect of detergent binding on cytochrome P450 2B4 structure as analyzed by X-ray crystallography and deuterium-exchange mass spectrometry., Shah MB, Jang HH, Wilderman PR, Lee D, Li S, Zhang Q, Stout CD, Halpert JR, Biophys Chem. 2016 Jun 1;216:1-8. doi: 10.1016/j.bpc.2016.05.007. PMID:27280734
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5iut.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5IUT
  • CSU: Contacts of Structural Units for 5IUT
  • Structure Factors (548 Kb)
  • Retrieve 5IUT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IUT from S2C, [Save to disk]
  • Re-refined 5iut structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IUT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IUT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iut_A] [5iut]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IUT
  • Community annotation for 5IUT at PDBWiki (http://pdbwiki.org)

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